I joined Signal Pharmaceuticals in 1997, and the company had been
established in 1994 with a couple of founding technologies that I
became involved in helping to develop. One was in the NF-kappa B
pathway, and the other was AP-1/JNK signaling pathway.
What are AP-1 and JNK and how are they related?
AP-1 is a transcription factor comprised of two proteins. One of
those is c-Jun, and JNK stands for the Jun N-terminal kinase. This
is the kinase that phosphorylates and activates Jun, thereby
activating the AP-1 transcription factor.
And the AP-1 transcription factor? What does that activate?
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“As soon as we published, we got inundated with requests for the compound.”
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It turns on a big swath of genes, but there are not many genes
that are solely AP-1 regulated—in other words, AP-1 is not the be
all and end all of activation to these genes, if any. It works in
concert with other transcription factors. So there are many genes
regulated by AP-1, but no gene is regulated only by AP-1.
And why was it considered a valuable technology for a biotech company?
Why did the company license the technology originally? Because
c-Jun is a proto-oncogene that was suspected to be involved in cell
proliferation, tumorigenesis, and the stress response. And so after
JNK was first described definitively in 1993, the founders of the
company saw it as an opportunity for therapeutic modulation.
Your highly cited 2001 PNAS paper is about the discovery of a
compound called SP600125. Now, what does SP600125 stand for?
"SP" stands for Signal Pharmaceuticals, and 600125 was
just the compound number in our library. Nothing more.
What was the observation described in the paper, and why do you think
it has been so highly cited?
As a drug discovery company we had set out to look for small
molecule inhibitors of JNK. The reason this paper gets cited a lot,
or at least one of them, is that this was the very first compound
discovered that selectively blocks JNK, and not the other two
kinases that are closely related and are frequently co-activated in
the same disease models. Those two are p38 and ERK. There had been
compounds that inhibited two or more of these kinases, but not JNK
alone until our compound. Typically when people are studying
inflammation, immune responses, cell proliferation, etc., all of
these get activated. And so people could never really work out which
of these kinases was responsible for the cell response they were
studying. There was a selective inhibitor of p38 available, but
really no such thing for JNK or ERK. Our compound could really
discriminate between those three. And generally small molecular
compounds are much easier to use than peptide- or nucleic acid-based
inhibitors. It was originally manufactured in the 1950s as a
dye-stuff, so it’s been out there a long time. What we did is
identify it as a JNK inhibitor, and so we have a patent for its use
as a JNK inhibitor.
Do you think the paper is cited more because this compound is useful
and informative, or more because it’s simply available?
It’s really both. JNK is a really hot area of research. This
whole MAP kinase signal transduction is a big area of research,
partly because it’s involved in so many of these cell processes.
Then along comes this really handy-dandy reagent, which allows you
to monitor and measure JNK involvement, so it’s going to get used
a lot.
How does Signal Pharmaceutical profit from this research if you don’t
own a composition-of-matter patent and the main use of the compound is
for further research?
We don’t profit financially from this compound. For us, as drug
people, it’s a proof-of-concept compound. It allows us to really
ask the question of whether a small molecule inhibitor of JNK can be
an effective therapy.
And do you have an answer?
The answer is we believe absolutely that’s the case. People
have used this compound now in many, many animal models of disease,
and they’ve shown that it prevents disease progression or further
injury. Our responsibility as a drug company is now to find a drug
molecule that has all the physical chemistry properties you want in
a drug and is safe for human use.
One assumes that all these other companies—these people who are
citing your paper—are off doing the same thing.
Many companies have gone after JNK. They’ve screened their
libraries, had drug optimization programs. Some have been
unsuccessful and stopped and moved onto other things. Others have
been successful and are pushing on into the clinic.
What has Signal Pharmaceuticals accomplished in this area in the five
years since you published the paper?
Since then we have expanded our drug discovery program, and we
have three compounds that are drug candidates. One is in the clinic
right now; it has been tested on human subjects.
For which disease?
I can’t comment on that right now. I can say that it has
completed a couple of phase I studies, which are safety studies.
That compound number is CC-401, and we actually have two papers
published on that compound, although we haven’t disclosed the
structure. We are disclosing its efficacy and how it works.
You’ve written an article recently linking JNK to many of the more
common chronic diseases of modern societies. How do you see its role
in this big picture of chronic disease?
I think maybe the easiest way to think about it is that JNK is an
enzyme found to be highly activated at sites of injury. Therefore
you can say that it’s associated with many pathologies or
diseases. What we have to do is unravel how causative it is for each
of these diseases. So the analogy is that if there’s an incident
somewhere and you rush to the scene and find 200 people hanging
around, you still have to figure out which one of those 200 people
were responsible for it, and which are just bystanders.
So how do you go about doing that?
I guess definitively it’s when a targeted drug prevents
disease. At first you test models of the disease pathology you’re
interested in—these can be cell models, animal models, ultimately
human clinical trials themselves—with many types of JNK
inhibitors. If your compound attains the end point of the study,
which is usually going to be a marker of disease or a symptom of
disease, then the conclusion is that JNK is driving or causative of
that pathology.
Was there an element of serendipity involved in finding this compound?
I can tell you the story very quickly. We had a screen. We
basically had the enzyme and substrate in high-throughput screening
plates. We rationally went after compounds that would block the
activity of this enzyme. So none of that was serendipity. We got a
large number of hits and we sifted through them, which is what you
do in this process. "We" means myself and a colleague who
is now at Pfizer, Brion Murray, and the chemist who was assigned to
this project, Yoshi Satoh. And so we looked at this molecule and
said, "What can we do with this?" We had the activity, and
that was quite potent, but the structure was not attractive. We each
did a number of things, and a key one was to put it in a number of
cellular assays, and we found that it behaved just as you would
hypothesize a JNK inhibitor would behave. So it blocked the
phosphorylation of AP-1, the expression of AP-1 regulated genes, and
it did in a dose-dependent manner. This was a good starting point, a
proof-of-concept compound that we could use to probe whether JNK is
really going to be a drug target or not, whether small molecules
that inhibit JNK will behave as a drug. It was a new platform from
which we could jump, a really big stepping stone. We had a tool, and
we could really go through cell systems and animal models and
hypothesize much better what role JNK is playing in disease.
How far along were you in this process when you decided to publish the
paper?
We probably first picked up the compound in 1998, and the paper
finally appeared in November 2001.
Did you feel that this time lag gave you a sufficient head start to
stay ahead of the competition?
In fact, it was more a case of finishing the experiments and
sitting down to write up the paper. I probably submitted the paper
in late 2000. Then it was reviewed. We made changes, etc. We were
happy to publish because we didn’t have the composition-of-matter
patent on the structure. It was a known compound. It’s just that
no one knew it was a JNK inhibitor. One thing that comes out of this
is that we learned a lot by getting our tools out to the public and
letting the research community, unknowingly, do our research for us.
This is really beneficial. We have strategic collaborations, in
which we actually hook up with people who have a specific model or
research of interest to us, but as a program we have learned an
enormous amount by reading papers on research that we never knew was
coming. The weight of all that research has been useful to our
program to push it forward. It’s a bit like those advertisements
that tell you to use the power of the internet to make decisions for
you. Here you put a tool out there and everyone takes it up and uses
it and publishes their data. I could say that I have, indirectly,
several hundred people out there working for me.
Are you surprised at how frequently this paper has been cited?
In hindsight, no. But I knew people would want this compound.
There was no question about that. What I didn’t know was how many
people were working in this area. As soon as we published, we got
inundated with requests for the compound.
Brydon Bennett, Ph.D.
Celgene Corporation
San Diego, CA, USA