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in-cites,
August 2007
http://www.in-cites.com/papers/Gilliland_Levine.html |
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An
interview with:
Dr. Gary Gilliland and Dr. Ross Levine |
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his
month, in-cites correspondent Gary Taubes talks with Dr. Gary
Gilliland and Dr. Ross Levine about their paper, "Activating
mutation in the tyrosine kinase JAK2 in polycythemia vera,
essential thrombocythemia, and myeloid metaplasia with
myelofibrosis" (Cancer Cell 7[4]: 387-97, April
2005). According to Essential
Science Indicators ,
this paper is currently the #1
Hot Paper in the
field of Biology & Biochemistry, with 267 citations to date.
Both Dr. Gilliland and Dr. Levine hail from the Department of
Medicine at Harvard’s Brigham and Women’s Hospital. Dr.
Gilliland is also a Howard Hughes Medical Institute Researcher,
Professor of Medicine at Harvard Medical School, Associate
Member of the Broad Institute of Harvard and MIT, Director of
the Leukemia Program for the Dana-Farber/Harvard Cancer Center,
and Director of the Cancer Stem Cell Program for the Harvard
Stem Cell Institute. Dr. Levine is also affiliated with the
Hematologic Malignancies division of the Dana Farber Cancer
Institute. |
Did you set out to look for one mutation in these three different
diseases—polycythemia vera, essential thrombocythemia, and myeloid
metaplasia with myelofibrosis—or did it just turn out this way?
Gilliland: These three diseases are the most common of
all these myeloproliferative syndromes. Tyrosine kinases had
been identified as playing critical roles in related blood
cancers, but nobody knew what causes these three. They had
remained mysteries.
In the past we had used what are called translocations to
find the relevant mutations. These are chromosomal
abnormalities. You can see them from 50,000 feet looking down at
the cells. You can literally see them in a microscope. They tell
you exactly where the gene is that causes the disease. They
point to the exact location among the 20,000 genes and three
billion nucleotides in each of the cells. They’re like a large
red flag waving in the microscope.
But there is no known chromosomal translocation in these
three diseases. We know there’s a mutation involved, but we had
no clue as to where they might be or even which of the 20,000
genes in our genome were involved. Nor did we know that there
would be one mutation key to all three. That was a surprise.
So how did you go about tracking this down and what were the key
steps?
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“Although the diseases we were looking at
are not common, there are a fair number of
patients with these diseases through the
United States.”
~Ross Levine |
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“...I
think the potential is now there to really
put a dent in the armor of all cancers.”
~Gary Gilliland |
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Levine: The results that we were able, as a group, to
generate were due to two things happening simultaneously. One
was that here at Harvard and MIT, a group of investigators had
become very interested in sequencing all the base pairs of DNA,
starting with tyrosine kinases, hoping to find the mutations in
those cases where there are not these chromosomal cues. The idea
is that you’re looking for a single misstep that might result in
a mutation that would activate a gene. We had begun to
collaborate in developing those platforms with Matthew Myerson
and Bill Sellers. They were using that approach to find
mutations in kinases in lung cancers, at the same time we were
beginning our work in blood cancers.
Although the diseases we were looking at are not common,
there are a fair number of patients with these diseases through
the United States. But they don’t necessarily come to one center
to be treated, so it’s difficult to collect enough cases to do
these studies. So the second thing that came together is that we
decided, in consultation with two of our clinical colleagues,
Martha Wadleigh and Stephanie Lee, to see if we could design a
better system for collecting samples, one that didn’t require
having to wait for patients to come to our clinic to be
diagnosed.
Given the use of the internet in general, and also the use of
the internet for patients with diseases to connect with each
other and discuss diseases in these on-line support groups, we
decided to seek consent for a trial that would identify and
enroll patients involved in internet groups all over the
country. After we got their consent, patients had their blood
drawn locally and then sent to us. We were hoping to collect
maybe 100 or 200 samples in a year. We ended up with 350 in four
months and it empowered us to do this kind of genetic analysis.
Gilliland: It was fantastic to see how excited the
patients were to participate. It was stunning how responsive
they were to our request. We could not have done this 10 or 15
years ago. It was a very clever idea on the part of Drs. Levine,
Wadleigh, and Lee.
Had this ever been done before?
Levine: Not in this way.
Gilliland: There had been epidemiologic types of surveys,
where you send questionnaires out and people fill them out and
send them back. As far as I know, this was the first example of
soliciting a specific patient population for blood samples and
for DNA from their germ line. We were asking them to swab their
mouths. This is the first time this was done. I’m sure it’s not
going to be the last.
Did you have to make an effort to confirm the diagnoses?
Levine: We did confirm the diagnoses by reviewing charts
from almost all the patients.
What do you do after you’ve got the blood samples and germline DNA?
Levine: First we extract DNA from the patients’ blood
cells and then we use these platforms first to increase the
amount of DNA, using PCR amplification, and then to sequence all
the kinases to look for candidate mutations. Once the candidates
are identified, we then went back to the patient’s germline
DNA—their non-blood DNA—and asked whether the mutations we found
were inherited or acquired. Based on previous work by many
people, everything we knew suggested these mutations would be
acquired.
There was no evidence that these diseases run in families?
Levine: There is evidence that they run in families, but
in most patients, that is not the case.
So what did the paper report and why was it so significant?
Levine: We found a single mutation in one kinase: a
single spot in the JAK2 kinase. The result is a single
substitution of one amino acid for another. And, to our
surprise, we found it in the vast majority of the patients with
these diseases. We then demonstrated that it’s an acquired event
in these patients—the same mutation over and over. We were
fairly surprised by that observation. It wasn’t a spectrum of
different mutations, but a single mutation that was recurrent in
three different diseases. It is also important to note that
several independent groups from the U.K., from Switzerland, and
from France also identified the JAK2 mutation at about the same
time, using different approaches.
Gilliland: Ross’s analysis involved 120,000 different DNA
sequencing runs and he had to sift through tens of millions of
base pairs of DNA to find this one mutation. The platform he
used to do this simply didn’t exist a few years ago. This was an
enabling technology.
And yet it’s not present in everyone. How do you explain the cases
in which this mutation is not found?
Levine: That’s a very interesting question. Again it’s
surprising that most of these patients have a single mutation,
but a significant minority do not. So when we made the first
observation, that was the unanswered question. Subsequent to our
initial report, a number of studies have identified alternative
mutations in some of these patients who don’t have the classical
JAK2 mutation. A group out of Cambridge University, led by
Anthony Green and with whom we were honored to collaborate,
identified other mutations in JAK2 in a small number of patients
with polycythemia vera.
We now hypothesize that mutations in the genes that interact
with JAK2, not kinases, but genes that interact with this
tyrosine kinase, might be the cause of the disease in the
absence of the JAK2 mutation. In our laboratory, we found a
mutation in a thrombopoietin receptor called MPL. That’s like
JAK2 in that it’s an acquired mutation that activates the MPL
gene. The important thing is that all the mutations identified
to date activate this JAK2 kinase activity, suggesting that,
regardless of the specific mutation, ultimately the disease is
caused by constitutive activation of JAK2.
What proportion of the citations this paper has garnered do you
attribute to the discovery itself and how much to the unique
internet protocol you invented?
Levine: I would suspect that it’s mostly the discovery,
although I hope there are people interested in the paper for the
internet component. The diseases we’re talking about have gone a
century since they were first identified without anyone
understanding the genetic cause. So our research is of
significant interest. It’s not the ultimate answer of what
causes these diseases, but it allows us to begin to understand
these diseases on a molecular basis.
Gilliland: I agree with that. There is some interest in
the internet protocol, but you still have to be in a
circumstance where you can enable that approach. Not every group
can do that. It requires that you have the necessary clinical
interfaces, and human consent committees, etc.
Another reason, by the way, that this paper is cited so
frequently is that it identifies an outstanding target for
intervention. So the citations are not just coming from the
academic side—understanding what’s behind these diseases.
They’re coming from the pharmaceutical community, which is
extremely interested in trying to develop the next Gleevec-like
drug to treat these diseases.
In the two years since you published the paper, what have you
learned?
Levine: A lot. First, as we mentioned, some alternate
mutations have been described to begin to account for patients
without the classical JAK2 mutation. Then a number of groups,
including Gary’s, have been working hard to understand what the
function of this gene is, in terms of how it’s activated—what
happens when it’s expressed in mice? And the answer is you get
diseases that look a lot like human polycythemia vera, which is
very interesting and important. However, much work remains to be
done, particularly, as Gary said, in designing drugs to inhibit
these genes. There is also quite a substantial amount of work by
many groups trying to understand the clinical relevance of this
mutation.
Was there any element of serendipity to this research? In other
words, did you get lucky somewhere?
Gilliland: For me, watching Ross do this research, I
would have to say that it just looked like ass-busting work to
me: sequencing every single tyrosine kinase in the entire human
genome, and running through the amount of sequences he did. It
would have been nice if there had been a little bit more luck
involved, but in the end it was a lot of hard work.
Do you know what this JAK2 mutation does and why it causes these
diseases?
Gilliland: We know these diseases are basically cancers
associated with overproduction of blood cells—white cells, red
cells, and platelets. Normally, production responds to our need.
If we’re anemic, for example, we make a hormone called
erythropoietin, which stimulates production of red blood cells.
If we have bacteria in our blood stream, we make a hormone
called GCSF that produces high levels of white blood cells. When
the need for these cells passes, everything returns to normal.
Now the hormones are no longer generated in response to the
stimulus. That’s how this normally works. The beauty of this is
that it really does make sense physiologically.
The way the signal is transmitted from the hormone to the
cell that will grow up to become a red cell is through this JAK
tyrosine kinase. When erythropoietin binds to the red cell
precursor, it activates JAK2, and that in turn sends all the
appropriate growth signals into a red cell. This mutation seems
to bypass the need for the hormone. Now JAK2 is always on, and
it’s continuously sending those signals down into the nucleus to
tell these cells to grow. That’s basically the disease phenotype
we see in humans: overproduction of one or more blood cell
lineages, be it white cells, red cells, or platelets.
Part of the proof that this is right is that if you put this
mutated JAK2 gene into a mouse, it develops incredibly high
white and red blood cell counts. That says this mutation in and
of itself is sufficient to cause disease. The mutation seems to
simply hijack the cells’ normal growth control. It turns the
switch on and there’s no way to turn it back off. And that’s
where the therapeutic potential lies. If we have a key that will
fit into the lock of this tyrosine kinase and switch it back off
again, these cells ought to go back to behaving normally.
Levine: The important thing is that this mutation allows
us to begin to understand these diseases. There’s still a lot we
don’t understand. Not everyone has the mutation, and this same
mutation causes similar but distinguishable diseases in
different people. There have to be other genetic events involved
in these diseases, and I think the explosion of genomic
platforms available, which are just expanding by the month, will
empower resources worldwide to understand what other mutations
are involved in these and other blood cancers and other cancers,
in general. That’s really empowering and that’s the goal now.
We also have to bring this back to the patient. So the other
goal is to come out with these drugs, as Gary said, that target
this mutation so we can actually provide treatments for these
diseases.
Another thing I would add is that this interest in tyrosine
kinases has led to them being evaluated in almost every human
cancer now. It’s being done by groups all over the world. And in
some cases this research has been incredibly fruitful.
If you lived in an ideal world with unlimited funding, what
experiment would you pursue that you cannot do now?
Gilliland: If I had unlimited resources, I would pursue
the notion that Ross mentioned, that this paradigm applies not
just to these rare blood diseases, but to every human cancer;
that they all, to some extent, follow this path. As it turns
out, these kinases also play important roles in some types of
gastrointestinal tumors, in lung cancers, in
breast
cancers, etc. They are very good targets for intervention.
The drugs that exist now are effective and have very mild side
effects compared with conventional therapies. So I think the
potential is now there to really put a dent in the armor of all
cancers.
But we need the resources to expand this program into all
tumors. These platforms are not cheap. It’s very expensive to do
DNA sequencing analysis, and that’s just one of about five or
six technology platforms emerging that we can and should use.
These are very expensive and they are hypothesis-generating
experiments, not hypothesis-testing, which means they’re very
valuable but it’s not easy to get federal support for this kind
of research. And we’re very dependent on that. Because of
conflict-of-interest issues, we don’t accept resources from the
pharmaceutical industry at all.
Is this a laboratory policy or a Harvard policy? And what’s the
rationale?
Gilliland: It’s actually mandated by the Howard Hughes
Medical Institute (HHMI), of which I am technically an employee.
I think it’s appropriate. We have to be very careful about
conflict of interest when it comes to testing for mutations in
human DNA and looking for treatments. We shouldn’t have any
financial interest in looking for these outcomes. That’s why in
an ideal world, which this isn’t, the entire budget for the
National Cancer Institute per year—$5 billion, which is not
chump change—would not be less than one month’s worth of the
cost of the war in Iraq. We have to understand that as a
society, if our priorities are to support these initiatives in
cancer biology and treatment, we must adequately support them.
We now have the tools in hand to begin to tackle cancers. We can
see the light at the end of the tunnel, but we’re severely
resource-limited, just when we need it the most.
If these tyrosine kinase mutations play roles in many or most human
cancers, does this tell us anything about the environmental
triggers?
Levine: I don’t know what Gary would say about this, but
the important thing is that, although we now understand a lot
about these cancers, we do not understand enough. And one thing
we don’t understand is why they occur. In a lot of cases, it
might be the errors resulting from the enormous number of times
that a cell has to replicate its DNA for its daughter cells.
Even with an incredibly accurate DNA replication system, the
error rate is large enough that this is going to happen. What we
don’t understand is why some mutations happen over and over—this
JAK2 mutation, for example. In some cases, there might be
environmental or genetic or inherited cues.
Gilliland: I agree. I think that’s probably where Ross’s
research would be going if he had unlimited resources. We don’t
understand where the mutations come from or the genetic
contributions, and we don’t understand well how the environment
interacts with the host, if you will. That’s very important,
like it is for any disease. If you can prevent the disease, it’s
always better than trying to treat it after the fact.
Is there anything else you’d like to add about your research, or a
message you’d like to give to the lay public?
Gilliland: We’d like to say that were very appreciative
of these patients and their support. We really view this as a
team effort. We’re also very grateful to the federal agencies
that do support us, to the Leukemia and Lymphoma Society, the
Doris Duke Charitable Foundation, and HHMI. The key thing about
the latter three is that they will actually give you money and
say, "Go off and do something clever with it." They’re willing
to take some risks. This project could not have happened with
only federal support. It happened because we had these other
foundations.
It’s also incredibly important for us to encourage young,
extraordinarily talented physician-scientists like Ross to
pursue these lines of investigations as a career. And these
foundations make it possible. If there was ever a time people
like him could have an impact, it’s now. But if you can’t get
the funding to do your work when you’re Ross’s age, then you go
back to clinical practice, and we never see the likes of him
again. That would be a tragedy. We have to continue to encourage
young investigators to go into these research arenas and
foundations like HHMI and make it possible.
Levine: HHMI funded my first foray into laboratory
research when I was still a medical student. I was at a very
early point in my career; I was pursuing clinical medicine, and
decided I wanted to supplement it with some laboratory research.
That experience was funded by HHMI and it allowed me to realize
the level of excitement that comes with this kind of research,
how much I enjoyed investigating human disease in the
laboratory, even though I was trained as a physician. That’s
what led me to come to Gary’s lab, and without that support, I
wouldn’t have made the choices I did and I wouldn’t be where I
am now.
D. Gary Gilliland, Ph.D., M.D.
Brigham and Women’s Hospital
Harvard Medical School
Boston, MA, USA
Ross L. Levine, M.D.
Brigham and Women’s Hospital
Harvard Medical School
Boston, MA, USA
| Dr. Gary Gilliland's
most-cited paper with 380 cites to date: |
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Gilliland's
most-cited paper is: Cools J, et al., "A tyrosine
kinase created by fusion of the PDGFRA and FIP1L1 genes as a
therapeutic target of imatinib in idiopathic
hypereosinophilic syndrome," N. Engl. J. Med.
348(13): 1201-14, 27 March 2003. |
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| Dr.
Ross Levine's and
most-cited paper with 267 cites to date: |
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Levine RL,
et al., “Activating mutation in the tyrosine kinase JAK2
in polycythemia vera, essential thrombocythemia, and myeloid
metaplasia with myelofibrosis,” Cancer Cell 7(4):
387-97, April 2005. |
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Source:
Essential Science Indicators |
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in-cites,
August 2007
http://www.in-cites.com/papers/Gilliland_Levine.html |
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