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in-cites, February 2002
Citing URL: http://www.in-cites.com/scientists/StephenJElledge.html

Scientists

             
An essay by:
Dr. Stephen J. Elledge
           

In this essay, Dr. Stephen J. Elledge takes readers through his highly cited research into the genetic factors important to the eukaryotic cell cycle. The ISI Essential Science Indicators Web product shows that Dr. Elledge has 47 papers cited a total of 9,825 times in the field of Molecular Biology & Genetics, placing him among the top 20 authors in this field. Dr. Elledge’s work is also represented in the Clinical Medicine and Multidisciplinary fields of ISI Essential Science Indicators. Dr. Elledge is a Professor in both the Biochemistry and Molecular & Human Genetics Departments at the Baylor College of Medicine. He is also an Investigator for the Howard Hughes Medical Institute.

One of the things that drew me into biology was the recombinant DNA revolution. I was studying chemistry at the University of Illinois in 1977 when I took a class that discussed the new methods to rearrange DNA. I was amazed by this and decided that I would like to work on recombinant DNA and so left chemistry to follow this new wave of biological discoveries waiting to happen. I did my graduate work at MIT working on DNA repair and found time for side projects on the development of new methods for generating recombinant DNA, essentially my hobby. During this period I developed the first phasmid cloning vectors that contained both a plasmid and phage origin, and this understanding of phage biology became the crux of many future discoveries.

I was a post-doctoral fellow in the Biochemistry Department at Stanford University and by complete accident I cloned a gene involved in synthesizing dNTPs needed for DNA replication. Since it was an accident, I wasn't very interested in it. However, since I was prone to working on extremely high-risk projects in hopes of doing something important, I was in need of a safe project in case I ever hoped to actually get a faculty position after my post-doc. So I followed up on the ribonucleotide reductase genes, eventually discovering that they were induced by DNA damage. This was an important discovery because it became the basis for a number of genetic screens that led to the discovery of a signal transduction pathway that senses and responds to DNA damage. However, that was not the most important aspect of this gene with respect to this story; it was also cell-cycle regulated, which got me thinking about the cell cycle. Not long after that, Paul Nurse, a leader of the cell-cycle field and co-winner of the 2001 Nobel Prize in medicine, gave a talk at UCSF and described isolating the human homolog of a key cell-cycle kinase gene, Cdc2, by introducing a human cDNA library into an S.pombe mutant. The methods were primitive but the message was clear, that the core of the cell cycle was functionally conserved and many human genes could be isolated by complementation cloning in yeast. This led to a marriage of my two interests, cloning technology and the cell cycle, and I further developed new cloning methods to make human cDNA libraries in yeast expression vectors and streamlined them to make them easy to use.

When I started my faculty position at the Baylor College of Medicine in Houston, the first experiment I performed was to introduce these new libraries into yeast cell-cycle mutants. The first gene I discovered was the human Cdc2 gene isolated by Nurse two years previously. However, I also isolated in that screen a relative of this kinase, Cdk2, which work from my lab and others subsequently revealed to be the key protein controlling the G1 to S phase transition, the critical transition for cancer. This was a key discovery and began my lab's involvement in human cell-cycle control. I then applied my newly developed cloning technologies to an emerging method for detecting protein-protein interactions called the two-hybrid system. I converted that system from a method for detecting interactions into a method for cloning cDNAs encoding proteins that associate with a target protein. Using Cdk2 as bait, my colleague Wade Harper and I isolated the p21CIP1 gene and showed it to be the first of a family of Cdk inhibitors. Bert Vogelstein's lab also identified the same gene as a gene regulated by p53 and we published our papers back-to-back in November of 1993. This was a watershed event in cell-cycle research and helped forge the connection between p53 and cell-cycle control. Our studies showed that p21 was a member of a family of inhibitors that the whole field began to work on. We also discovered that one member of this family, p57KIP2, was found to be mutant in individuals with the familial overgrowth and cancer predisposition disease Beckwith-Weidemann Syndrome. Our group was the first to demonstrate that these inhibitors were key regulators of developmental growth control being involved in everything from lens to muscle development.

Another important discovery came from looking for human genes that could complement other yeast cell-cycle regulators. In 1996, we found that human cyclin F could allow yeast cdc4 mutants to live. Cdc4 mutants fail to enter into S phase because they need to degrade the Cdk inhibitor Sic1. Through a series of experiments we found that both the human cyclin F and yeast Cdc4 proteins could bind to a protein called Skp1 which was in humans and yeast. We discovered that Skp1 was a core component of an E3 ubiquitin ligase complex and that it could bind to a large family of proteins through a conserved motif, the F-box. We set forth the F-box hypothesis, which stated that F-box proteins were the specificity subunits for this ubiquitin ligase complex we later called the SCF. At that time no one knew how proteins were chosen for ubiquitination and subsequent destruction by the proteosome, and only one E3 had been identified previously. I turned to my expert biochemical collaborator Wade Harper for help and together we established that the Cdc4 F-box protein could allow the SCF to recognize phosphorylated Sic1 and ubiquitinate it. Importantly, if we substituted a different F-box protein in, it would no longer recognize Sic1 but would now recognize a new substrate. Since there were hundreds of F-box proteins in the database, it opened up the field of ubiquitin ligase specificity to a wide audience. Since our first paper on F-box proteins four years ago, there have been over 100 papers implicating the SCF in numerous pathways including cell-cycle control, cell morphology, amino acid control, DNA replication, gene expression, the immune response, cell fate determination, hand and foot development, AIDS, b-catenin regulation, plant circadian rhythms, plant flowering, and auxin and jasmonate responses in plants. Thus, the discovery of F-box proteins and the SCF pathway resulted in an explosion of discoveries about the control of regulated protein stability in biology.End

Dr. Stephen J. Elledge
Howard Hughes Medical Institute
Baylor College of Medicine
Department of Biochemistry
Houston, TX, USA

in-cites, February 2002
Citing URL: http://www.in-cites.com/scientists/StephenJElledge.html


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